Publicaciones

Publicaciones

Estas son algunas de las publicaciones y presentaciones de los miembros de CRBio:

Vargas M., Mora Cross M., Cuadra J., Ulate Rodríguez W. Sharing Species Pages in the Atlas of Living Costa Rica using Plinian Core. Biodiversity Information Science and Standards 3: e35474, Jun. 2019. DOI: 10.3897/biss.3.35474

Ulate, W. Lessons Learned from Managing Millions of Records to Create the World Flora Online. Biodiversity Information Science and Standards 3: e35245, Jun. 2019. DOI:10.3897/biss.3.35245

Manuel Vargas, María Mora, William Ulate, José Cuadra, “The Living Atlases Community in Action: Sharing Species Pages through the Atlas of Living Costa Rica” Biodiversity Information Science and Standards 2: e25990, Aug. 2018. DOI: 10.3897/biss.2.25990

William Ulate. Unlocking biodiversity knowledge through Text Mining and Crowdsourced Tagging of Legacy Literature. Symposium S08. Expanding the Usefulness of Literature in Sustaining Biodiversity at TDWG 2014 Annual Conference, Oct. 2014. TDWG 2014 - Paper 557

William Ulate. Expanding the Biodiversity Heritage Library. Symposium: Crafting the future of a Global Biodiversity Heritage Library for diverse community’s needs at TDWG 2013 Annual Conference, Oct. 2013. TDWG 2013 - Paper 455

Jose Cuadra. Enseñanzas adquiridas en el desarrollo de un portal para integrar datos utilizando esquemas de intercambio de datos. XXXIII Conferencia Latinoamericana en Informática, San José de Costa Rica, 9-12 de octubre, 2007 CLEI 2007 - Poster INBi 26.pdf

Otras publicaciones

Estas son otras publicaciones y presentaciones en las que han colaborado los miembros de CRBio a lo largo de su carrera profesional:

Borsch, T., Berendsohn, W., Dalcin, E., Delmas, M., Demissew, S., Elliott, A., Fritsch, P., Fuchs, A., Geltman, D., Güner, A., Haevermans, T., Knapp, S., le Roux, M.M., Loizeau, P.‐A., Miller, C., Miller, J., Miller, J.T., Palese, R., Paton, A., Parnell, J., Pendry, C., Qin, H.‐N., Sosa, V., Sosef, M., von Raab‐Straube, E., Ranwashe, F., Raz, L., Salimov, R., Smets, E., Thiers, B., Thomas, W., Tulig, M., Ulate, W., Ung, V., Watson, M., Jackson, P.W. and Zamora, N. World Flora Online: Placing taxonomists at the heart of a definitive and comprehensive global resource on the world’s plants. TAXON, 69: 1311-1341, Nov. 2020. DOI: 10.1002/tax.12373

Ulate W., Mora MM. Assessment of Annotation Needs of Botanists. Biodiversity Information Science and Standards 4: e59308, Oct. 2020. DOI: 10.3897./biss.4.59308

Woodburn M, Paul DL, Addink W, Baskauf SJ, Blum S, Chapman C, Grant S, Groom Q, Jones J, Petersen M, Raes N, Smith D, Tilley L, Trekels M, Trizna M, Ulate W, Vincent S, Walls R, Webbink K, Zermoglio P Unity in Variety: Developing a collection description standard by consensus. Biodiversity Information Science and Standards 4: e59233. Oct. 2020 DOI: 10.3897/biss.4.59233

Berendsohn W., Miller C., Ulate W., Watson M. Caught in the concept jungle: developing a format for data contributions to the World Flora Online. Biodiversity Information Science and Standards 3: e35232, Jun. 2019. DOI: 10.3897/biss.3.35232

Woodburn M., Paul D., Ulate W., Raes N. Exposing the Dark Data of Undigitized Collections: A TDWG global standard for collection descriptions. Biodiversity Information Science and Standards 3: e37201, Jun. 2019. DOI: 10.3897/biss.3.37201

Dagtekin, Onatkut, William Ulate, and Riza Batista-Navarro. “Towards the Automatic Extraction of Plant Traits from Textual Descriptions.” Friedrich-Schiller-Universität Jena, Sept. 2018. DOI: 10.22032/DBT.37984.

Batista-Navarro, Riza; Laporte, Marie-Angelique; Regan, Michael; Ulate, William and Weiland, Claus: Extending the Environment Ontology with Text-mined Habitat Mentions. In: Friedrich-Schiller-Universität Jena. Sept. 2018 DOI: 10.22032/dbt.37907

Chuck Miller and William Ulate, Descriptive Data Challenges for the World Flora Online, Biodiversity Information Science and Standards 2: e26731, Aug. 2018. DOI: 10.3897/biss.2.26731

A.E. Thessen, C.J. Jenkins, R.L. Walls, S. Antony, R. Batista-Navarro, P.L. Buttigieg, J. Deck,R. Guralnick, M.A. Laporte, J. Nair, M. Regan, K. Schulz, B.J. Stucky, W. Ulate, J. Verdolin, C.Weiland, R. Bhat, R. Duerr, J. Martin, S. Myers, M. Palmer, J. Preciado. Extending the Ecological Ontologies Using Machine Learning and Natural Language Processing. Conference: ClearEarth Natural Language Processing (NLP) for Earth Sciences project bioHackathon. Aug. 2017. Boulder, CO, USA. Researchgate Publication 329991157

Riza Batista-Navarro, Axel J. Soto, Nhung T.H. Nguyen, William Ulate, and Sophia Ananiadou, Tutorial: Enriching Digital Collections Using Tools for Text Mining, Indexing and Visualization, in J. Kamps et al. (Eds.): TPDL 2017, LNCS 10450, pp. 665–666, Sep. 2017. DOI: 10.1007/978-3-319-67008-9. Springer International Publishing AG 2017

Chuck Miller and William Ulate, World Flora Online Project: An online flora of all known plants, Biodiversity Information Science and Standards 1: e20529, Aug. 2017. DOI: 10.3897/tdwgproceedings.1.20529

Riza Batista-Navarro, Nhung Nguyen, Axel Soto, William Ulate, Sophia Ananiadou. Argo as a Platform for Integrating Distinct Biodiversity Analytics Tools into Workflows for Building Graph Databases., Biodiversity Information Science and Standards 1: e20529, Aug. 2017. DOI: 10.3897/tdwgproceedings.1.20067

Riza Theresa Batista-Navarro, Jennifer Hammock, William Ulate, Sophia Ananiadou: A Text Mining Framework for Accelerating the Semantic Curation of Literature. TPDL 2016: 459-462 Sept. 2016. DOI: 10.1007/978-3-319-43997-6_44

Ulate, W., Batista-Navarro, R., Real use cases for Semantic Information from the Mining Biodiversity project. Symposium 01A: Semantics for Biodiversity Science: Challenges & Solutions. TDWG 2016 Annual Conference, Dec. 2016. TDWG 2016 - Paper 972

Batista-Navarro, R., Ulate, W., Hammock, J., Kontonatsios, G. Rose-Sandler, T., Ananiadou, S., Unlocking knowledge in biodiversity legacy literature through automatic semantic metadata extraction, TDWG 2015 Annual Conference, Set. 2015. TDWG 2015 - Paper 831

Rose-Sandler, T., Ulate, W., Seidman, M., Flanagan, Belknap, G., van Hyning, V., O’Donnell, J., Engaging the citizen scientist in content enhancement for the Biodiversity Heritage Library, TDWG 2015 Annual Conference, Set. 2015. TDWG 2015 - Paper 834

Deborah Paul, Andrea Matsunaga, Miao Chen, Jason Best, Sylvia Orli, William Ulate, Reed Beaman, Data Discovery and Doer Happiness: Uses for Optical Character Recognition (OCR) Output. Symposium S05. Access to digitisation tools and methods at TDWG 2014 Annual Conference, Oct. 2014. TDWG 2014 - Paper 597

Riza Batista-Navarro, Aminul Islam, William Ulate, Jennifer Hammock, Axel Soto, Sophia Ananiadou, Evangelos Milios. Enriching the legacy literature with OCR corrections and text-mined semantic metadata, Symposium S05. Access to digitisation tools and methods at TDWG 2014 Annual Conference, Oct. 2014. TDWG 2014 - Paper 588

Martin Kalfatovic, Carolyn Sheffield, William Ulate, Connie Rinaldo, Grace Costantino. Digital Object Identifiers (DOIs) for the Biodiversity Heritage Library. Poster at TDWG 2014 Annual Conference, Oct. 2014. TDWG 2014 - Paper 565

Paul, Deborah L.; Heidorn, P. Bryan; Best, Jason; Gilbert, Edward; Neill, Amanda; Nelson, Gil; Ulate, William. Help iDigBio reveal hidden data: iDigBio Augmenting OCR working group needs you. iConference 2013 Workshop. iSchools, Feb. 2013. HDL: 2142/42502

Anglin, Robert; Best, Jason; Figueiredo, Renato; Gilbert, Edward; Gnanasambandam, Nathan; Gottschalk, Stephen; Haston, Elspeth; Heidorn, P. Bryan; Lafferty, Daryl; Lang, Peter; Nelson, Gil; Paul, Deborah; Ulate, William; Watson, Kimberly; Zhang, Qianjin. Improving the character of optical character recognition (OCR): iDigBio augmenting OCR working group seeks collaborators and strategies to improve OCR parsing of OCR output for faster, more efficient, cheaper natural history collections specimen label digitization. iConference 2013 Workshop. iSchools Feb. 2013. pp. 957–964 HDL: 2142/42089

Trish-Rose Sandler, Constance A. Rinaldo, Keri Thompson, William Ulate, Martin Kalfatovic: Collaboration and communication tools used by the biodiversity heritage library. In Proceedings of the 12th ACM/IEEE-CS Joint Conference on Digital Libraries. JCDL 2012: pp. 361-362 DOI: 10.1145/2232817.2232891